v2 of index multiple files per msg-id, add reindex command

David Bremner david at tethera.net
Sun May 7 05:40:00 PDT 2017

This obsoletes id:20170414025004.5334-1-david at tethera.net. Let me
repeat the warning from that version:

| WARNING: reindexing is an intrusive operation. I don't think this will
| corrupt your database, but previous versions thrashed threading pretty
| well. notmuch-dump is your friend.

Compared to the previous version, this one cleans up the code to print
total file counts (splitting into multiple commits), and updates doc
and tests.

There is a lot of code movement here, mainly splitting up database.cc


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